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Novel core promoter elements in the oomycete pathogen Phytophthora infestansand their influence on expression detected by genome-wide analysis

Overview of attention for article published in BMC Genomics, February 2013
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  • Above-average Attention Score compared to outputs of the same age and source (51st percentile)

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Title
Novel core promoter elements in the oomycete pathogen Phytophthora infestansand their influence on expression detected by genome-wide analysis
Published in
BMC Genomics, February 2013
DOI 10.1186/1471-2164-14-106
Pubmed ID
Authors

Sourav Roy, Laetitia Poidevin, Tao Jiang, Howard S Judelson

Abstract

The core promoter is the region flanking the transcription start site (TSS) that directs formation of the pre-initiation complex. Core promoters have been studied intensively in mammals and yeast, but not in more diverse eukaryotes. Here we investigate core promoters in oomycetes, a group within the Stramenopile kingdom that includes important plant and animal pathogens. Prior studies of a small collection of genes proposed that oomycete core promoters contain a 16 to 19 nt motif bearing an Initiator-like sequence (INR) flanked by a novel sequence named FPR, but this has not been extended to whole-genome analysis.

X Demographics

X Demographics

The data shown below were collected from the profiles of 3 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 33 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 2 6%
Mexico 1 3%
Unknown 30 91%

Demographic breakdown

Readers by professional status Count As %
Researcher 8 24%
Student > Ph. D. Student 7 21%
Student > Doctoral Student 6 18%
Professor > Associate Professor 3 9%
Student > Master 3 9%
Other 3 9%
Unknown 3 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 19 58%
Biochemistry, Genetics and Molecular Biology 8 24%
Environmental Science 1 3%
Social Sciences 1 3%
Unknown 4 12%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 2. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 19 March 2013.
All research outputs
#13,885,035
of 22,701,287 outputs
Outputs from BMC Genomics
#5,325
of 10,622 outputs
Outputs of similar age
#107,131
of 191,516 outputs
Outputs of similar age from BMC Genomics
#57
of 118 outputs
Altmetric has tracked 22,701,287 research outputs across all sources so far. This one is in the 37th percentile – i.e., 37% of other outputs scored the same or lower than it.
So far Altmetric has tracked 10,622 research outputs from this source. They receive a mean Attention Score of 4.7. This one is in the 46th percentile – i.e., 46% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 191,516 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 43rd percentile – i.e., 43% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 118 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 51% of its contemporaries.