Why use "robust" FPKMs?
Posted by burger, at bioinformatics.stackexchange.com,
Both DESeq2 and edgeR have an FPKM/RPKM function that by default uses normalized library sizes ("robust" option in DESeq2).
Both DESeq2 and edgeR have an FPKM/RPKM function that by default uses normalized library sizes ("robust" option in DESeq2).
I am trying to collect gene expression data for the point of fitting gene regulatory networks. My background is primarily in…