Title |
Effects of cytosine methylation on transcription factor binding sites
|
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Published in |
BMC Genomics, March 2014
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DOI | 10.1186/1471-2164-15-119 |
Pubmed ID | |
Authors |
Yulia A Medvedeva, Abdullah M Khamis, Ivan V Kulakovskiy, Wail Ba-Alawi, Md Shariful I Bhuyan, Hideya Kawaji, Timo Lassmann, Matthias Harbers, Alistair RR Forrest, Vladimir B Bajic, The FANTOM consortium |
Abstract |
DNA methylation in promoters is closely linked to downstream gene repression. However, whether DNA methylation is a cause or a consequence of gene repression remains an open question. If it is a cause, then DNA methylation may affect the affinity of transcription factors (TFs) for their binding sites (TFBSs). If it is a consequence, then gene repression caused by chromatin modification may be stabilized by DNA methylation. Until now, these two possibilities have been supported only by non-systematic evidence and they have not been tested on a wide range of TFs. An average promoter methylation is usually used in studies, whereas recent results suggested that methylation of individual cytosines can also be important. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 2 | 25% |
United Kingdom | 1 | 13% |
Japan | 1 | 13% |
Belgium | 1 | 13% |
Unknown | 3 | 38% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Scientists | 5 | 63% |
Members of the public | 3 | 38% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 3 | <1% |
United Kingdom | 2 | <1% |
Netherlands | 2 | <1% |
India | 1 | <1% |
Norway | 1 | <1% |
Belgium | 1 | <1% |
Canada | 1 | <1% |
Japan | 1 | <1% |
Spain | 1 | <1% |
Other | 0 | 0% |
Unknown | 318 | 96% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 93 | 28% |
Researcher | 58 | 18% |
Student > Master | 47 | 14% |
Student > Bachelor | 38 | 11% |
Student > Doctoral Student | 22 | 7% |
Other | 42 | 13% |
Unknown | 31 | 9% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 138 | 42% |
Biochemistry, Genetics and Molecular Biology | 91 | 27% |
Medicine and Dentistry | 14 | 4% |
Computer Science | 9 | 3% |
Chemistry | 5 | 2% |
Other | 29 | 9% |
Unknown | 45 | 14% |