Title |
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
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Published in |
Genome Biology, November 2006
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DOI | 10.1186/gb-2006-7-11-r106 |
Pubmed ID | |
Authors |
Nichole L King, Eric W Deutsch, Jeffrey A Ranish, Alexey I Nesvizhskii, James S Eddes, Parag Mallick, Jimmy Eng, Frank Desiere, Mark Flory, Daniel B Martin, Bong Kim, Hookeun Lee, Brian Raught, Ruedi Aebersold |
Abstract |
We present the Saccharomyces cerevisiae PeptideAtlas composed from 47 diverse experiments and 4.9 million tandem mass spectra. The observed peptides align to 61% of Saccharomyces Genome Database (SGD) open reading frames (ORFs), 49% of the uncharacterized SGD ORFs, 54% of S. cerevisiae ORFs with a Gene Ontology annotation of 'molecular function unknown', and 76% of ORFs with Gene names. We highlight the use of this resource for data mining, construction of high quality lists for targeted proteomics, validation of proteins, and software development. |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Spain | 1 | 1% |
United States | 1 | 1% |
Italy | 1 | 1% |
France | 1 | 1% |
Unknown | 68 | 94% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 23 | 32% |
Student > Ph. D. Student | 17 | 24% |
Professor | 5 | 7% |
Professor > Associate Professor | 5 | 7% |
Student > Master | 5 | 7% |
Other | 10 | 14% |
Unknown | 7 | 10% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 36 | 50% |
Computer Science | 9 | 13% |
Chemistry | 8 | 11% |
Biochemistry, Genetics and Molecular Biology | 7 | 10% |
Medicine and Dentistry | 2 | 3% |
Other | 4 | 6% |
Unknown | 6 | 8% |