@CampbellTayte @bielleogy @lpachter This is why we cant have nice things. Sigh. BWA is 2009 (https://t.co/BJr52v4abU), Bowtie is 2009 (https://t.co/fp3VvadRP5) But Bowtie2 exists, as does BWA-MEM and BWA-MEM2. It’s twitter, I used short hand and I linked
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Langmead et al. A simple and effective strategy. Just a pleasure to go through. https://t.co/Sns5sjNnQm
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@DIP_UAdeC @SalvadorHV @DrCrissh Ultrafast and memory-efficient alignment of short DNA sequences to the human genome https://t.co/WeC09gdskH
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@StevenSalzberg1 @BenLangmead Sorry but I was trying to be very exact. The Bowtie1 paper stated specifically that "Bowtie does not yet support paired-end alignment or alignments with insertions or deletions." https://t.co/rBI2N5udGB