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Accurate genome relative abundance estimation for closely related species in a metagenomic sample

Overview of attention for article published in BMC Bioinformatics, July 2014
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (82nd percentile)
  • Good Attention Score compared to outputs of the same age and source (76th percentile)

Mentioned by

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18 X users
facebook
1 Facebook page

Citations

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21 Dimensions

Readers on

mendeley
78 Mendeley
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3 CiteULike
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Title
Accurate genome relative abundance estimation for closely related species in a metagenomic sample
Published in
BMC Bioinformatics, July 2014
DOI 10.1186/1471-2105-15-242
Pubmed ID
Authors

Michael B Sohn, Lingling An, Naruekamol Pookhao, Qike Li

Abstract

Metagenomics has a great potential to discover previously unattainable information about microbial communities. An important prerequisite for such discoveries is to accurately estimate the composition of microbial communities. Most of prevalent homology-based approaches utilize solely the results of an alignment tool such as BLAST, limiting their estimation accuracy to high ranks of the taxonomy tree.

X Demographics

X Demographics

The data shown below were collected from the profiles of 18 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 78 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 8 10%
Sweden 2 3%
Brazil 2 3%
Germany 1 1%
Estonia 1 1%
Norway 1 1%
Unknown 63 81%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 24 31%
Researcher 13 17%
Student > Master 8 10%
Professor > Associate Professor 6 8%
Student > Bachelor 5 6%
Other 14 18%
Unknown 8 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 34 44%
Computer Science 7 9%
Mathematics 6 8%
Biochemistry, Genetics and Molecular Biology 4 5%
Environmental Science 4 5%
Other 13 17%
Unknown 10 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 25 October 2014.
All research outputs
#4,112,533
of 23,577,654 outputs
Outputs from BMC Bioinformatics
#1,528
of 7,400 outputs
Outputs of similar age
#39,479
of 228,457 outputs
Outputs of similar age from BMC Bioinformatics
#31
of 132 outputs
Altmetric has tracked 23,577,654 research outputs across all sources so far. Compared to these this one has done well and is in the 82nd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 7,400 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has done well, scoring higher than 79% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 228,457 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 82% of its contemporaries.
We're also able to compare this research output to 132 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 76% of its contemporaries.