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KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes

Overview of attention for article published in BMC Genomics, October 2014
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (74th percentile)
  • High Attention Score compared to outputs of the same age and source (81st percentile)

Mentioned by

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4 X users
patent
1 patent

Citations

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126 Dimensions

Readers on

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172 Mendeley
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Title
KvarQ: targeted and direct variant calling from fastq reads of bacterial genomes
Published in
BMC Genomics, October 2014
DOI 10.1186/1471-2164-15-881
Pubmed ID
Authors

Andreas Steiner, David Stucki, Mireia Coscolla, Sonia Borrell, Sebastien Gagneux

Abstract

High-throughput DNA sequencing produces vast amounts of data, with millions of short reads that usually have to be mapped to a reference genome or newly assembled. Both reference-based mapping and de novo assembly are computationally intensive, generating large intermediary data files, and thus require bioinformatics skills that are often lacking in the laboratories producing the data. Moreover, many research and practical applications in microbiology require only a small fraction of the whole genome data.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 172 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 1 <1%
Australia 1 <1%
Sweden 1 <1%
United Kingdom 1 <1%
Canada 1 <1%
United States 1 <1%
Unknown 166 97%

Demographic breakdown

Readers by professional status Count As %
Researcher 40 23%
Student > Master 30 17%
Student > Ph. D. Student 25 15%
Student > Bachelor 16 9%
Other 10 6%
Other 29 17%
Unknown 22 13%
Readers by discipline Count As %
Agricultural and Biological Sciences 53 31%
Biochemistry, Genetics and Molecular Biology 26 15%
Medicine and Dentistry 20 12%
Immunology and Microbiology 15 9%
Computer Science 12 7%
Other 15 9%
Unknown 31 18%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 April 2020.
All research outputs
#6,032,295
of 22,765,347 outputs
Outputs from BMC Genomics
#2,520
of 10,639 outputs
Outputs of similar age
#64,171
of 255,208 outputs
Outputs of similar age from BMC Genomics
#39
of 210 outputs
Altmetric has tracked 22,765,347 research outputs across all sources so far. This one has received more attention than most of these and is in the 73rd percentile.
So far Altmetric has tracked 10,639 research outputs from this source. They receive a mean Attention Score of 4.7. This one has done well, scoring higher than 75% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 255,208 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 74% of its contemporaries.
We're also able to compare this research output to 210 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 81% of its contemporaries.