↓ Skip to main content

Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq

Overview of attention for article published in BMC Genomics, November 2014
Altmetric Badge

About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (91st percentile)
  • High Attention Score compared to outputs of the same age and source (92nd percentile)

Mentioned by

twitter
22 X users
patent
1 patent
facebook
1 Facebook page

Citations

dimensions_citation
224 Dimensions

Readers on

mendeley
243 Mendeley
citeulike
1 CiteULike
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Title
Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Published in
BMC Genomics, November 2014
DOI 10.1186/1471-2164-15-1039
Pubmed ID
Authors

Jeffrey E Barrick, Geoffrey Colburn, Daniel E Deatherage, Charles C Traverse, Matthew D Strand, Jordan J Borges, David B Knoester, Aaron Reba, Austin G Meyer

Abstract

Mutations that alter chromosomal structure play critical roles in evolution and disease, including in the origin of new lifestyles and pathogenic traits in microbes. Large-scale rearrangements in genomes are often mediated by recombination events involving new or existing copies of mobile genetic elements, recently duplicated genes, or other repetitive sequences. Most current software programs for predicting structural variation from short-read DNA resequencing data are intended primarily for use on human genomes. They typically disregard information in reads mapping to repeat sequences, and significant post-processing and manual examination of their output is often required to rule out false-positive predictions and precisely describe mutational events.

X Demographics

X Demographics

The data shown below were collected from the profiles of 22 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 243 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 1%
Spain 2 <1%
Switzerland 1 <1%
Korea, Republic of 1 <1%
Sweden 1 <1%
Belgium 1 <1%
Thailand 1 <1%
Unknown 233 96%

Demographic breakdown

Readers by professional status Count As %
Researcher 67 28%
Student > Ph. D. Student 63 26%
Student > Master 24 10%
Student > Bachelor 18 7%
Student > Doctoral Student 14 6%
Other 24 10%
Unknown 33 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 88 36%
Biochemistry, Genetics and Molecular Biology 60 25%
Immunology and Microbiology 15 6%
Medicine and Dentistry 8 3%
Computer Science 6 2%
Other 23 9%
Unknown 43 18%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 16. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 06 May 2021.
All research outputs
#2,276,164
of 25,736,439 outputs
Outputs from BMC Genomics
#570
of 11,316 outputs
Outputs of similar age
#30,215
of 371,647 outputs
Outputs of similar age from BMC Genomics
#24
of 321 outputs
Altmetric has tracked 25,736,439 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 91st percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 11,316 research outputs from this source. They receive a mean Attention Score of 4.8. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 371,647 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 91% of its contemporaries.
We're also able to compare this research output to 321 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 92% of its contemporaries.