Title |
Metadata mapping and reuse in caBIG™
|
---|---|
Published in |
BMC Bioinformatics, February 2009
|
DOI | 10.1186/1471-2105-10-s2-s4 |
Pubmed ID | |
Authors |
Isaac Kunz, Ming-Chin Lin, Lewis Frey |
Abstract |
This paper proposes that interoperability across biomedical databases can be improved by utilizing a repository of Common Data Elements (CDEs), UML model class-attributes and simple lexical algorithms to facilitate the building domain models. This is examined in the context of an existing system, the National Cancer Institute (NCI)'s cancer Biomedical Informatics Grid (caBIG). The goal is to demonstrate the deployment of open source tools that can be used to effectively map models and enable the reuse of existing information objects and CDEs in the development of new models for translational research applications. This effort is intended to help developers reuse appropriate CDEs to enable interoperability of their systems when developing within the caBIG framework or other frameworks that use metadata repositories. |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 7 | 14% |
Brazil | 1 | 2% |
United Kingdom | 1 | 2% |
Sweden | 1 | 2% |
Saudi Arabia | 1 | 2% |
Canada | 1 | 2% |
Unknown | 39 | 76% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 15 | 29% |
Student > Ph. D. Student | 9 | 18% |
Professor > Associate Professor | 5 | 10% |
Student > Bachelor | 4 | 8% |
Student > Postgraduate | 4 | 8% |
Other | 10 | 20% |
Unknown | 4 | 8% |
Readers by discipline | Count | As % |
---|---|---|
Computer Science | 19 | 37% |
Medicine and Dentistry | 10 | 20% |
Agricultural and Biological Sciences | 6 | 12% |
Engineering | 4 | 8% |
Social Sciences | 3 | 6% |
Other | 5 | 10% |
Unknown | 4 | 8% |