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A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat

Overview of attention for article published in BMC Bioinformatics, April 2007
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4 Wikipedia pages

Citations

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13 Dimensions

Readers on

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37 Mendeley
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6 CiteULike
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3 Connotea
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Title
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat
Published in
BMC Bioinformatics, April 2007
DOI 10.1186/1471-2105-8-132
Pubmed ID
Authors

Rudi Alberts, Peter Terpstra, Menno Hardonk, Leonid V Bystrykh, Gerald de Haan, Rainer Breitling, Jan-Peter Nap, Ritsert C Jansen

Abstract

The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interpretation. This variation can be caused by probes that do not properly match their target gene or that match multiple genes. To determine the accuracy of Affymetrix arrays, we developed an extensive verification protocol, for mouse arrays incorporating the NCBI RefSeq, NCBI UniGene Unique, NIA Mouse Gene Index, and UCSC mouse genome databases.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 37 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 2 5%
Spain 1 3%
United Kingdom 1 3%
Unknown 33 89%

Demographic breakdown

Readers by professional status Count As %
Researcher 14 38%
Other 4 11%
Student > Ph. D. Student 4 11%
Student > Bachelor 2 5%
Professor 2 5%
Other 9 24%
Unknown 2 5%
Readers by discipline Count As %
Agricultural and Biological Sciences 19 51%
Computer Science 5 14%
Biochemistry, Genetics and Molecular Biology 4 11%
Medicine and Dentistry 3 8%
Immunology and Microbiology 1 3%
Other 2 5%
Unknown 3 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 February 2015.
All research outputs
#7,453,479
of 22,786,691 outputs
Outputs from BMC Bioinformatics
#3,023
of 7,279 outputs
Outputs of similar age
#26,118
of 74,076 outputs
Outputs of similar age from BMC Bioinformatics
#21
of 44 outputs
Altmetric has tracked 22,786,691 research outputs across all sources so far. This one is in the 44th percentile – i.e., 44% of other outputs scored the same or lower than it.
So far Altmetric has tracked 7,279 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has gotten more attention than average, scoring higher than 50% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 74,076 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 16th percentile – i.e., 16% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 44 others from the same source and published within six weeks on either side of this one. This one is in the 15th percentile – i.e., 15% of its contemporaries scored the same or lower than it.