Title |
De novo assembly and characterization of transcriptomes of early-stage fruit from two genotypes of Annona squamosa L. with contrast in seed number
|
---|---|
Published in |
BMC Genomics, February 2015
|
DOI | 10.1186/s12864-015-1248-3 |
Pubmed ID | |
Authors |
Yogesh Gupta, Ashish K Pathak, Kashmir Singh, Shrikant S Mantri, Sudhir P Singh, Rakesh Tuli |
Abstract |
Annona squamosa L., a popular fruit tree, is the most widely cultivated species of the genus Annona. The lack of transcriptomic and genomic information limits the scope of genome investigations in this important shrub. It bears aggregate fruits with numerous seeds. A few rare accessions with very few seeds have been reported for Annona. A massive pyrosequencing (Roche, 454 GS FLX+) of transcriptome from early stages of fruit development (0, 4, 8 and 12 days after pollination) was performed to produce expression datasets in two genotypes, Sitaphal and NMK-1, that show a contrast in the number of seeds set in fruits. The data reported here is the first source of genome-wide differential transcriptome sequence in two genotypes of A. squamosa, and identifies several candidate genes related to seed development. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 2 | 100% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 2 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Chile | 1 | 2% |
United States | 1 | 2% |
Norway | 1 | 2% |
Unknown | 48 | 94% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 13 | 25% |
Researcher | 11 | 22% |
Student > Master | 5 | 10% |
Student > Postgraduate | 4 | 8% |
Professor | 3 | 6% |
Other | 11 | 22% |
Unknown | 4 | 8% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 29 | 57% |
Biochemistry, Genetics and Molecular Biology | 5 | 10% |
Immunology and Microbiology | 3 | 6% |
Medicine and Dentistry | 3 | 6% |
Unspecified | 1 | 2% |
Other | 2 | 4% |
Unknown | 8 | 16% |