@michelnivard @MarigortaLab @F_Azr @LudeFranke Heya just saw I missed this from yesterday. Your memory serves, Lude's paper is our ref 19 (https://t.co/q8uNfc1yLY). We wanted to focus on pop strat aspects + provide a pipe as ~no one calculates/adjusts gene
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@MarigortaLab @minouye271 @gushamilton @michelnivard @F_Azr "The median genotype concordance r2 for the 1,081,155 imputed SNPs for the European Geuvadis samples was r2 = 0.92" (and there are better imputation algorithms today) https://t.co/gN9XD4EH1I
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Calling genotypes from public RNA-sequencing data enables identification of genetic variants that affect gene-expression levels https://t.co/eZLZzFKbeJ
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@chr1swallace Congratulations on your manuscript, leveraging ASE to map eQTLs without genotypes looks promising. I do wonder if you are aware of our manuscript from 2015 in Nature Medicine where we use RNA-seq genotyping to do something similar: https://t.