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A genome draft of the legless anguid lizard, Ophisaurus gracilis

Overview of attention for article published in Giga Science, April 2015
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (85th percentile)

Mentioned by

twitter
9 tweeters
peer_reviews
1 peer review site
weibo
1 weibo user
facebook
2 Facebook pages
wikipedia
1 Wikipedia page
googleplus
1 Google+ user

Citations

dimensions_citation
22 Dimensions

Readers on

mendeley
57 Mendeley
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Title
A genome draft of the legless anguid lizard, Ophisaurus gracilis
Published in
Giga Science, April 2015
DOI 10.1186/s13742-015-0056-7
Pubmed ID
Authors

Bo Song, Shifeng Cheng, Yanbo Sun, Xiao Zhong, Jieqiong Jin, Rui Guan, Robert W Murphy, Jing Che, Yaping Zhang, Xin Liu

Abstract

Transition from a lizard-like to a snake-like body form is one of the most important transformations in reptilian evolution. The increasing number of sequenced reptilian genomes is enabling a deeper understanding of vertebrate evolution, although the genetic basis of the loss of limbs in reptiles remains enigmatic. Here we report genome sequencing, assembly, and annotation for the Asian glass lizard Ophisaurus gracilis, a limbless lizard species with an elongated snake-like body form. Addition of this species to the genome repository will provide an excellent resource for studying the genetic basis of limb loss and trunk elongation. O. gracilis genome sequencing using the Illumina HiSeq2000 platform resulted in 274.20 Gbp of raw data that was filtered and assembled to a final size of 1.78 Gbp, comprising 6,717 scaffolds with N50 = 1.27 Mbp. Based on the k-mer estimated genome size of 1.71 Gbp, the assembly appears to be nearly 100% complete. A total of 19,513 protein-coding genes were predicted, and 884.06 Mbp of repeat sequences (approximately half of the genome) were annotated. The draft genome of O. gracilis has similar characteristics to both lizard and snake genomes. We report the first genome of a lizard from the family Anguidae, O. gracilis. This supplements currently available genetic and genomic resources for amniote vertebrates, representing a major increase in comparative genome data available for squamate reptiles in particular.

Twitter Demographics

The data shown below were collected from the profiles of 9 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 57 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 4%
United Kingdom 1 2%
Hong Kong 1 2%
Czechia 1 2%
Unknown 52 91%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 16 28%
Researcher 15 26%
Student > Master 8 14%
Student > Bachelor 4 7%
Other 3 5%
Other 6 11%
Unknown 5 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 32 56%
Biochemistry, Genetics and Molecular Biology 13 23%
Medicine and Dentistry 2 4%
Environmental Science 1 2%
Veterinary Science and Veterinary Medicine 1 2%
Other 2 4%
Unknown 6 11%

Attention Score in Context

This research output has an Altmetric Attention Score of 11. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 15 August 2017.
All research outputs
#2,078,813
of 17,416,875 outputs
Outputs from Giga Science
#501
of 858 outputs
Outputs of similar age
#33,323
of 232,472 outputs
Outputs of similar age from Giga Science
#1
of 1 outputs
Altmetric has tracked 17,416,875 research outputs across all sources so far. Compared to these this one has done well and is in the 87th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 858 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 23.5. This one is in the 41st percentile – i.e., 41% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 232,472 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 85% of its contemporaries.
We're also able to compare this research output to 1 others from the same source and published within six weeks on either side of this one. This one has scored higher than all of them