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Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships

Overview of attention for article published in Fungal Biology and Biotechnology, June 2018
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Title
Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships
Published in
Fungal Biology and Biotechnology, June 2018
DOI 10.1186/s40694-018-0056-3
Pubmed ID
Authors

Sonia Chadha, Sayaji T. Mehetre, Ravindra Bansal, Alan Kuo, Andrea Aerts, Igor V. Grigoriev, Irina S. Druzhinina, Prasun K. Mukherjee

Abstract

Cytochrome P450s form an important group of enzymes involved in xenobiotics degradation and metabolism, both primary and secondary. These enzymes are also useful in industry as biotechnological tools for bioconversion and a few are reported to be involved in pathogenicity. Trichoderma spp. are widely used in industry and agriculture and are known for their biosynthetic potential of a large number of secondary metabolites. For realising the full biosynthetic potential of an organism, it is important to do a genome-wide annotation and cataloguing of these enzymes. Here, we have studied the genomes of seven species (T. asperellum, T. atroviride, T. citrinoviride, T. longibrachiatum, T. reesei , T. harzianum and T. virens) and identified a total of 477 cytochrome P450s. We present here the classification, evolution and structure as well as predicted function of these proteins. This study would pave the way for functional characterization of these groups of enzymes and will also help in realization of their full economic potential. Our CYPome annotation and evolutionary studies of the seven Trichoderma species now provides opportunities for exploration of research-driven strategies to select Trichoderma species for various applications especially in relation to secondary metabolism and degradation of environmental pollutants.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 44 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 44 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 7 16%
Student > Bachelor 3 7%
Student > Doctoral Student 3 7%
Student > Postgraduate 3 7%
Other 2 5%
Other 6 14%
Unknown 20 45%
Readers by discipline Count As %
Agricultural and Biological Sciences 9 20%
Biochemistry, Genetics and Molecular Biology 6 14%
Environmental Science 2 5%
Veterinary Science and Veterinary Medicine 1 2%
Business, Management and Accounting 1 2%
Other 5 11%
Unknown 20 45%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 08 June 2018.
All research outputs
#13,263,501
of 23,085,832 outputs
Outputs from Fungal Biology and Biotechnology
#90
of 145 outputs
Outputs of similar age
#162,676
of 329,875 outputs
Outputs of similar age from Fungal Biology and Biotechnology
#3
of 6 outputs
Altmetric has tracked 23,085,832 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 145 research outputs from this source. They typically receive more attention than average, with a mean Attention Score of 7.9. This one is in the 35th percentile – i.e., 35% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 329,875 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 49th percentile – i.e., 49% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 6 others from the same source and published within six weeks on either side of this one. This one has scored higher than 3 of them.