@drkahaynes We have a pipeline for the de novo analysis of ChIP-seq data, where the peaks were called after assembly of the Chip-seq data. https://t.co/Y7KSsW4MOB
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@drkahaynes @chrstn_e @KharchenkoLab @guilbourque Finally, there was a cool paper a couple years ago from Ziv Bar-Joseph that did mini assemblies from ChIP-seq. Called them ChIPtigs and it was a completely reference-free approach https://t.co/Gm7xDqPOGb
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ChIP-seq analysis without reference genome: De novo ChIP-seq analysis @genomebiology https://t.co/G2u8lxrl3H
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<it>De novo</it> ChIP-seq analysis https://t.co/iUXzR6pJ7e #genomebiology