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Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays

Overview of attention for article published in Genome Biology, January 2010
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Title
Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays
Published in
Genome Biology, January 2010
DOI 10.1186/gb-2010-11-1-r4
Pubmed ID
Authors

Luca Santuari, Sylvain Pradervand, Amelia-Maria Amiguet-Vercher, Jerôme Thomas, Eavan Dorcey, Keith Harshman, Ioannis Xenarios, Thomas E Juenger, Christian S Hardtke

Abstract

Identification of small polymorphisms from next generation sequencing short read data is relatively easy, but detection of larger deletions is less straightforward. Here, we analyzed four divergent Arabidopsis accessions and found that intersection of absent short read coverage with weak tiling array hybridization signal reliably flags deletions. Interestingly, individual deletions were frequently observed in two or more of the accessions examined, suggesting that variation in gene content partly reflects a common history of deletion events.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 65 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 5%
France 1 2%
Norway 1 2%
Germany 1 2%
Sweden 1 2%
Brazil 1 2%
China 1 2%
United Kingdom 1 2%
Unknown 55 85%

Demographic breakdown

Readers by professional status Count As %
Researcher 17 26%
Student > Ph. D. Student 17 26%
Professor > Associate Professor 10 15%
Professor 6 9%
Student > Doctoral Student 5 8%
Other 6 9%
Unknown 4 6%
Readers by discipline Count As %
Agricultural and Biological Sciences 48 74%
Computer Science 3 5%
Biochemistry, Genetics and Molecular Biology 2 3%
Engineering 2 3%
Medicine and Dentistry 2 3%
Other 1 2%
Unknown 7 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 31 March 2010.
All research outputs
#17,286,379
of 25,374,917 outputs
Outputs from Genome Biology
#4,093
of 4,467 outputs
Outputs of similar age
#144,662
of 173,741 outputs
Outputs of similar age from Genome Biology
#17
of 18 outputs
Altmetric has tracked 25,374,917 research outputs across all sources so far. This one is in the 21st percentile – i.e., 21% of other outputs scored the same or lower than it.
So far Altmetric has tracked 4,467 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 27.6. This one is in the 5th percentile – i.e., 5% of its peers scored the same or lower than it.
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We're also able to compare this research output to 18 others from the same source and published within six weeks on either side of this one. This one is in the 5th percentile – i.e., 5% of its contemporaries scored the same or lower than it.