@XinyangBing @twang5 @mayanknkc Hi Xinyang! We used a conservative approach in which multi-mapped reads are not included. Currently, the majority of human TEs are uniquely mappable! https://t.co/OW01CgvFZC
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No wonder, but still surprising for me that just discarding the less MAPQ reads ends up with LOWER proportion of younger transposons. Noteworthy especially when focusing on young TEs. The fig & discussion of the paper(https://t.co/GAKMRaE2dm) #bowtie2
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RT @CedricFeschotte: Agreed, short read mapping to unique TE definitely not a big issue currently in human as shown here: https://t.co/mJZD…
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RT @CedricFeschotte: Agreed, short read mapping to unique TE definitely not a big issue currently in human as shown here: https://t.co/mJZD…