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Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

Overview of attention for article published in BMC Bioinformatics, June 2011
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (92nd percentile)
  • High Attention Score compared to outputs of the same age and source (96th percentile)

Mentioned by

blogs
1 blog
twitter
7 X users
patent
5 patents
wikipedia
1 Wikipedia page

Citations

dimensions_citation
165 Dimensions

Readers on

mendeley
165 Mendeley
citeulike
6 CiteULike
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Title
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Published in
BMC Bioinformatics, June 2011
DOI 10.1186/1471-2105-12-221
Pubmed ID
Authors

Torbjørn Rognes

Abstract

The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest approach to parallelisation with SIMD technology has previously been described by Farrar in 2007. The aim of this study was to explore whether further speed could be gained by other approaches to parallelisation.

X Demographics

X Demographics

The data shown below were collected from the profiles of 7 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 165 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 2 1%
Switzerland 2 1%
France 2 1%
Spain 2 1%
Korea, Republic of 1 <1%
Sweden 1 <1%
India 1 <1%
Malaysia 1 <1%
China 1 <1%
Other 3 2%
Unknown 149 90%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 43 26%
Researcher 30 18%
Student > Master 20 12%
Professor > Associate Professor 11 7%
Other 10 6%
Other 34 21%
Unknown 17 10%
Readers by discipline Count As %
Computer Science 49 30%
Agricultural and Biological Sciences 47 28%
Biochemistry, Genetics and Molecular Biology 24 15%
Engineering 12 7%
Psychology 2 1%
Other 10 6%
Unknown 21 13%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 18. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 07 November 2023.
All research outputs
#2,069,567
of 25,655,374 outputs
Outputs from BMC Bioinformatics
#445
of 7,734 outputs
Outputs of similar age
#8,930
of 122,698 outputs
Outputs of similar age from BMC Bioinformatics
#3
of 99 outputs
Altmetric has tracked 25,655,374 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 91st percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 7,734 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.5. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 122,698 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 92% of its contemporaries.
We're also able to compare this research output to 99 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 96% of its contemporaries.