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Transcriptome analysis of the almond moth, Cadra cautella, female abdominal tissues and identification of reproduction control genes

Overview of attention for article published in BMC Genomics, November 2019
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Title
Transcriptome analysis of the almond moth, Cadra cautella, female abdominal tissues and identification of reproduction control genes
Published in
BMC Genomics, November 2019
DOI 10.1186/s12864-019-6130-2
Pubmed ID
Authors

Mureed Husain, Muhammad Tufail, Khalid Mehmood, Khawaja Ghulam Rasool, Abdulrahman Saad Aldawood

Abstract

The almond moth, Cadra cautella is a destructive pest of stored food commodities including dates that causes severe economic losses for the farming community worldwide. To date, no genetic information related to the molecular mechanism/strategies of its reproduction is available. Thus, transcriptome analysis of C. cautella female abdominal tissues was performed via next-generation sequencing (NGS) to recognize the genes responsible for reproduction. The NGS was performed with an Illumina Hiseq 2000 sequencer (Beijing Genomics Institute: BGI). From the transcriptome data, 9,804,804,120 nucleotides were generated and their assemblage resulted in 62,687 unigenes. The functional annotation analyses done by different databases, annotated, 27,836 unigenes in total. The transcriptome data of C. cautella female abdominal tissue was submitted to the National Center for Biotechnology Information (accession no: PRJNA484692). The transcriptome analysis yielded several genes responsible for C. cautella reproduction including six Vg gene transcripts. Among the six Vg gene transcripts, only one was highly expressed with 3234.95 FPKM value (fragments per kilobase per million mapped reads) that was much higher than that of the other five transcripts. Higher differences in the expression level of the six Vg transcripts were confirmed by running the RT-PCR using gene specific primers, where the expression was observed only in one transcript it was named as the CcVg. This is the first study to explore C. cautella reproduction control genes and it might be supportive to explore the reproduction mechanism in this pest at the molecular level. The NGS based transcriptome pool is valuable to study the functional genomics and will support to design biotech-based management strategies for C. cautella.

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Geographical breakdown

Country Count As %
Unknown 9 100%

Demographic breakdown

Readers by professional status Count As %
Student > Bachelor 2 22%
Researcher 2 22%
Student > Ph. D. Student 1 11%
Lecturer 1 11%
Unknown 3 33%
Readers by discipline Count As %
Arts and Humanities 1 11%
Biochemistry, Genetics and Molecular Biology 1 11%
Agricultural and Biological Sciences 1 11%
Unknown 6 67%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 23 November 2019.
All research outputs
#20,592,137
of 23,177,498 outputs
Outputs from BMC Genomics
#9,324
of 10,715 outputs
Outputs of similar age
#383,255
of 457,712 outputs
Outputs of similar age from BMC Genomics
#213
of 255 outputs
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