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Workflows for microarray data processing in the Kepler environment

Overview of attention for article published in BMC Bioinformatics, May 2012
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (75th percentile)
  • Good Attention Score compared to outputs of the same age and source (67th percentile)

Mentioned by

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6 X users

Citations

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13 Dimensions

Readers on

mendeley
57 Mendeley
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8 CiteULike
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Title
Workflows for microarray data processing in the Kepler environment
Published in
BMC Bioinformatics, May 2012
DOI 10.1186/1471-2105-13-102
Pubmed ID
Authors

Thomas Stropp, Timothy McPhillips, Bertram Ludäscher, Mark Bieda

Abstract

Microarray data analysis has been the subject of extensive and ongoing pipeline development due to its complexity, the availability of several options at each analysis step, and the development of new analysis demands, including integration with new data sources. Bioinformatics pipelines are usually custom built for different applications, making them typically difficult to modify, extend and repurpose. Scientific workflow systems are intended to address these issues by providing general-purpose frameworks in which to develop and execute such pipelines. The Kepler workflow environment is a well-established system under continual development that is employed in several areas of scientific research. Kepler provides a flexible graphical interface, featuring clear display of parameter values, for design and modification of workflows. It has capabilities for developing novel computational components in the R, Python, and Java programming languages, all of which are widely used for bioinformatics algorithm development, along with capabilities for invoking external applications and using web services.

X Demographics

X Demographics

The data shown below were collected from the profiles of 6 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 57 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 7%
Italy 2 4%
Brazil 2 4%
Sweden 1 2%
Netherlands 1 2%
United Kingdom 1 2%
Poland 1 2%
Unknown 45 79%

Demographic breakdown

Readers by professional status Count As %
Researcher 19 33%
Student > Ph. D. Student 7 12%
Student > Bachelor 5 9%
Professor 5 9%
Professor > Associate Professor 5 9%
Other 11 19%
Unknown 5 9%
Readers by discipline Count As %
Agricultural and Biological Sciences 21 37%
Computer Science 17 30%
Medicine and Dentistry 5 9%
Arts and Humanities 3 5%
Biochemistry, Genetics and Molecular Biology 2 4%
Other 4 7%
Unknown 5 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 6. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 14 August 2013.
All research outputs
#5,813,033
of 22,665,794 outputs
Outputs from BMC Bioinformatics
#2,159
of 7,247 outputs
Outputs of similar age
#40,393
of 164,419 outputs
Outputs of similar age from BMC Bioinformatics
#34
of 104 outputs
Altmetric has tracked 22,665,794 research outputs across all sources so far. This one has received more attention than most of these and is in the 74th percentile.
So far Altmetric has tracked 7,247 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has gotten more attention than average, scoring higher than 70% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 164,419 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 75% of its contemporaries.
We're also able to compare this research output to 104 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 67% of its contemporaries.