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RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis

Overview of attention for article published in BMC Bioinformatics, February 2011
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Citations

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Title
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Published in
BMC Bioinformatics, February 2011
DOI 10.1186/1471-2105-12-52
Pubmed ID
Authors

Barry R Zeeberg, Hongfang Liu, Ari B Kahn, Martin Ehler, Vinodh N Rajapakse, Robert F Bonner, Jacob D Brown, Brian P Brooks, Vladimir L Larionov, William Reinhold, John N Weinstein, Yves G Pommier

Abstract

The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such as GoMiner can leverage GO to perform ontological analysis of microarray and proteomics studies, typically generating a list of significant functional categories. Two or more of the categories are often redundant, in the sense that identical or nearly-identical sets of genes map to the categories. The redundancy might typically inflate the report of significant categories by a factor of three-fold, create an illusion of an overly long list of significant categories, and obscure the relevant biological interpretation.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 58 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 7%
Germany 2 3%
Portugal 1 2%
Brazil 1 2%
France 1 2%
Spain 1 2%
India 1 2%
Unknown 47 81%

Demographic breakdown

Readers by professional status Count As %
Researcher 22 38%
Student > Ph. D. Student 12 21%
Student > Master 5 9%
Professor 3 5%
Student > Postgraduate 3 5%
Other 9 16%
Unknown 4 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 30 52%
Biochemistry, Genetics and Molecular Biology 10 17%
Computer Science 4 7%
Medicine and Dentistry 4 7%
Mathematics 1 2%
Other 4 7%
Unknown 5 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 24 June 2012.
All research outputs
#20,160,460
of 22,669,724 outputs
Outputs from BMC Bioinformatics
#6,820
of 7,247 outputs
Outputs of similar age
#172,696
of 183,542 outputs
Outputs of similar age from BMC Bioinformatics
#30
of 35 outputs
Altmetric has tracked 22,669,724 research outputs across all sources so far. This one is in the 1st percentile – i.e., 1% of other outputs scored the same or lower than it.
So far Altmetric has tracked 7,247 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one is in the 1st percentile – i.e., 1% of its peers scored the same or lower than it.
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We're also able to compare this research output to 35 others from the same source and published within six weeks on either side of this one. This one is in the 1st percentile – i.e., 1% of its contemporaries scored the same or lower than it.