GRiNCH: simultaneous smoothing and detection of topological units of genome organization from sparse chromatin contact count matrices with matrix factorization

Overview of attention for article published in Genome Biology, May 2021

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Identifying TAD-like domains on single-cell Hi-C data by graph embedding and changepoint detection

Article in Bioinformatics (March 2024)

ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization

Preprint in bioRxiv (November 2023)

HiCVAE: A Variational Auto-Encoder Framework for Simulating Hi-C Data

Conference proceeding (October 2023)

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