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Kerfuffle: a web tool for multi-species gene colocalization analysis

Overview of attention for article published in BMC Bioinformatics, January 2013
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (86th percentile)
  • High Attention Score compared to outputs of the same age and source (83rd percentile)

Mentioned by

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14 X users

Citations

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7 Dimensions

Readers on

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34 Mendeley
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1 CiteULike
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Title
Kerfuffle: a web tool for multi-species gene colocalization analysis
Published in
BMC Bioinformatics, January 2013
DOI 10.1186/1471-2105-14-22
Pubmed ID
Authors

Robert Aboukhalil, Bernard Fendler, Gurinder S Atwal

Abstract

The evolutionary pressures that underlie the large-scale functional organization of the genome are not well understood in eukaryotes. Recent evidence suggests that functionally similar genes may colocalize (cluster) in the eukaryotic genome, suggesting the role of chromatin-level gene regulation in shaping the physical distribution of coordinated genes. However, few of the bioinformatic tools currently available allow for a systematic study of gene colocalization across several, evolutionarily distant species. Furthermore, most tools require the user to input manually curated lists of gene position information, DNA sequence or gene homology relations between species. With the growing number of sequenced genomes, there is a need to provide new comparative genomics tools that can address the analysis of multi-species gene colocalization.

X Demographics

X Demographics

The data shown below were collected from the profiles of 14 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 34 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 6%
Netherlands 1 3%
Brazil 1 3%
Australia 1 3%
Sri Lanka 1 3%
India 1 3%
Unknown 27 79%

Demographic breakdown

Readers by professional status Count As %
Researcher 11 32%
Student > Ph. D. Student 9 26%
Professor > Associate Professor 4 12%
Student > Master 4 12%
Student > Bachelor 2 6%
Other 4 12%
Readers by discipline Count As %
Agricultural and Biological Sciences 21 62%
Biochemistry, Genetics and Molecular Biology 5 15%
Computer Science 3 9%
Engineering 2 6%
Medicine and Dentistry 1 3%
Other 0 0%
Unknown 2 6%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 9. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 18 February 2013.
All research outputs
#3,844,421
of 23,881,329 outputs
Outputs from BMC Bioinformatics
#1,363
of 7,454 outputs
Outputs of similar age
#40,362
of 289,927 outputs
Outputs of similar age from BMC Bioinformatics
#23
of 137 outputs
Altmetric has tracked 23,881,329 research outputs across all sources so far. Compared to these this one has done well and is in the 83rd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 7,454 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.5. This one has done well, scoring higher than 81% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 289,927 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 86% of its contemporaries.
We're also able to compare this research output to 137 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 83% of its contemporaries.