@lh3lh3 @minouye271 @richard_durbin @ilanshom I'd also argue for referencing theory in the "Evaluating sequence assemblies" section. A decade ago we developed CGAL for assessing the quality of assemblies from a model-based point of view. https://t.co/nKIrs
@Phil_A_Richmond @eric_normandeau @atifbd @mbeisen @IngileifBryndis @atifbd, in particular, has worked on several k-mer (reference-free) projects: Computing likelihoods for assemblies: https://t.co/nKIrsQmU4g Speeding up reference-free association mapping
@pashadag @PangaiaProject @sreeramkannan You've also ignored work such as https://t.co/nKIrsQ4KQ8 and https://t.co/2DjP6WcB5e that evaluate assemblies based on theoretical considerations and have been widely used.
@OUPBioinfo I'm surprised ALE (https://t.co/QWOvMQUdFl) and CGAL (https://t.co/8cl1rNwgZX) are not mentioned at all