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A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover

Overview of attention for article published in BMC Genomics, February 2013
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Title
A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover
Published in
BMC Genomics, February 2013
DOI 10.1186/1471-2164-14-100
Pubmed ID
Authors

Istvan Nagy, Susanne Barth, Jeanne Mehenni-Ciz, Michael T Abberton, Dan Milbourne

Abstract

White clover (Trifolium repens L.) is an allotetraploid species possessing two highly collinear ancestral sub-genomes. The apparent existence of highly similar homeolog copies for the majority of genes in white clover is problematic for the development of genome-based resources in the species. This is especially true for the development of genetic markers based on single nucleotide polymorphisms (SNPs), since it is difficult to distinguish between homeolog-specific and allelic variants. Robust methods for categorising single nucleotide variants as allelic or homeolog-specific in large transcript datasets are required. We illustrate one potential approach in this study.

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Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 38 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 8%
United Kingdom 1 3%
Netherlands 1 3%
Sweden 1 3%
Unknown 32 84%

Demographic breakdown

Readers by professional status Count As %
Researcher 13 34%
Student > Ph. D. Student 10 26%
Student > Master 3 8%
Student > Doctoral Student 2 5%
Professor 2 5%
Other 4 11%
Unknown 4 11%
Readers by discipline Count As %
Agricultural and Biological Sciences 26 68%
Biochemistry, Genetics and Molecular Biology 3 8%
Mathematics 1 3%
Economics, Econometrics and Finance 1 3%
Physics and Astronomy 1 3%
Other 0 0%
Unknown 6 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 13 February 2013.
All research outputs
#18,329,207
of 22,696,971 outputs
Outputs from BMC Genomics
#8,146
of 10,616 outputs
Outputs of similar age
#222,707
of 287,582 outputs
Outputs of similar age from BMC Genomics
#272
of 358 outputs
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