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A hybrid short read mapping accelerator

Overview of attention for article published in BMC Bioinformatics, February 2013
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6 X users

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mendeley
45 Mendeley
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1 CiteULike
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Title
A hybrid short read mapping accelerator
Published in
BMC Bioinformatics, February 2013
DOI 10.1186/1471-2105-14-67
Pubmed ID
Authors

Yupeng Chen, Bertil Schmidt, Douglas L Maskell

Abstract

The rapid growth of short read datasets poses a new challenge to the short read mapping problem in terms of sensitivity and execution speed. Existing methods often use a restrictive error model for computing the alignments to improve speed, whereas more flexible error models are generally too slow for large-scale applications. A number of short read mapping software tools have been proposed. However, designs based on hardware are relatively rare. Field programmable gate arrays (FPGAs) have been successfully used in a number of specific application areas, such as the DSP and communications domains due to their outstanding parallel data processing capabilities, making them a competitive platform to solve problems that are "inherently parallel".

X Demographics

X Demographics

The data shown below were collected from the profiles of 6 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 45 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 4%
France 2 4%
Germany 1 2%
Russia 1 2%
Sweden 1 2%
Unknown 38 84%

Demographic breakdown

Readers by professional status Count As %
Researcher 16 36%
Student > Ph. D. Student 11 24%
Student > Master 7 16%
Student > Bachelor 2 4%
Lecturer 2 4%
Other 6 13%
Unknown 1 2%
Readers by discipline Count As %
Agricultural and Biological Sciences 15 33%
Computer Science 13 29%
Engineering 6 13%
Biochemistry, Genetics and Molecular Biology 4 9%
Medicine and Dentistry 2 4%
Other 2 4%
Unknown 3 7%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 26 November 2014.
All research outputs
#12,678,664
of 22,699,621 outputs
Outputs from BMC Bioinformatics
#3,620
of 7,254 outputs
Outputs of similar age
#97,664
of 192,953 outputs
Outputs of similar age from BMC Bioinformatics
#81
of 159 outputs
Altmetric has tracked 22,699,621 research outputs across all sources so far. This one is in the 43rd percentile – i.e., 43% of other outputs scored the same or lower than it.
So far Altmetric has tracked 7,254 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one is in the 48th percentile – i.e., 48% of its peers scored the same or lower than it.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 192,953 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 49th percentile – i.e., 49% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 159 others from the same source and published within six weeks on either side of this one. This one is in the 45th percentile – i.e., 45% of its contemporaries scored the same or lower than it.