Title |
A proposal to sequence the genome of a garter snake (Thamnophis sirtalis)
|
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Published in |
Environmental Microbiome, April 2011
|
DOI | 10.4056/sigs.1664145 |
Pubmed ID | |
Authors |
Todd A. Castoe, Anne M. Bronikowski, Edmund D. Brodie, Scott V. Edwards, Michael E. Pfrender, Michael D. Shapiro, David D. Pollock, Wesley C. Warren |
Abstract |
Here we develop an argument in support of sequencing a garter snake (Thamnophis sirtalis) genome, and outline a plan to accomplish this. This snake is a common, widespread, nonvenomous North American species that has served as a model for diverse studies in evolutionary biology, physiology, genomics, behavior and coevolution. The anole lizard is currently the only genome sequence available for a non-avian reptile. Thus, the garter snake at this time would be the first available snake genome sequence and as such would provide much needed comparative representation of non-avian reptilian genomes, and would also allow critical new insights for vertebrate comparative genomic studies. We outline the major areas of discovery that the availability of the garter snake genome would enable, and describe a plan for whole-genome sequencing. |
X Demographics
Geographical breakdown
Country | Count | As % |
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United States | 1 | 100% |
Demographic breakdown
Type | Count | As % |
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Scientists | 1 | 100% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
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Sudan | 1 | 1% |
Chile | 1 | 1% |
Saudi Arabia | 1 | 1% |
Mexico | 1 | 1% |
Japan | 1 | 1% |
United States | 1 | 1% |
Unknown | 66 | 92% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 18 | 25% |
Student > Ph. D. Student | 13 | 18% |
Student > Bachelor | 10 | 14% |
Student > Master | 10 | 14% |
Professor | 4 | 6% |
Other | 9 | 13% |
Unknown | 8 | 11% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 44 | 61% |
Biochemistry, Genetics and Molecular Biology | 11 | 15% |
Environmental Science | 3 | 4% |
Arts and Humanities | 1 | 1% |
Earth and Planetary Sciences | 1 | 1% |
Other | 1 | 1% |
Unknown | 11 | 15% |