@StevenJRobbins Hi Steve, you could try this program we published in 2016. Works direct from read data and is fast, however non-annotation rate is fairly high: https://t.co/dRfk6alsxY https://t.co/NCEDFopoew
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RiboTagger: fast & unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys https://t.co/2i6iCXezh0
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RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome sur… https://t.co/hX2xtpLFQh
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RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome sur https://t.co/4V5V7thBOT