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Variant discovery in targeted resequencing using whole genome amplified DNA

Overview of attention for article published in BMC Genomics, July 2013
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (81st percentile)
  • Good Attention Score compared to outputs of the same age and source (79th percentile)

Mentioned by

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13 X users
googleplus
1 Google+ user

Citations

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6 Dimensions

Readers on

mendeley
41 Mendeley
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2 CiteULike
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Title
Variant discovery in targeted resequencing using whole genome amplified DNA
Published in
BMC Genomics, July 2013
DOI 10.1186/1471-2164-14-468
Pubmed ID
Authors

Amit R Indap, Regina Cole, Christina L Runge, Gabor T Marth, Michael Olivier

Abstract

Next generation sequencing and advances in genomic enrichment technologies have enabled the discovery of the full spectrum of variants from common to rare alleles in the human population. The application of such technologies can be limited by the amount of DNA available. Whole genome amplification (WGA) can overcome such limitations. Here we investigate applicability of using WGA by comparing SNP and INDEL variant calls from a single genomic/WGA sample pair from two capture separate experiments: a 50 Mbp whole exome capture and a custom capture array of 4 Mbp region on chr12.

X Demographics

X Demographics

The data shown below were collected from the profiles of 13 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 41 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 2 5%
Germany 1 2%
Brazil 1 2%
Australia 1 2%
Taiwan 1 2%
United Kingdom 1 2%
Unknown 34 83%

Demographic breakdown

Readers by professional status Count As %
Researcher 16 39%
Student > Ph. D. Student 10 24%
Other 5 12%
Student > Doctoral Student 2 5%
Student > Master 2 5%
Other 2 5%
Unknown 4 10%
Readers by discipline Count As %
Agricultural and Biological Sciences 23 56%
Biochemistry, Genetics and Molecular Biology 5 12%
Medicine and Dentistry 3 7%
Immunology and Microbiology 2 5%
Neuroscience 1 2%
Other 1 2%
Unknown 6 15%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 8. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 03 August 2013.
All research outputs
#4,705,809
of 25,371,288 outputs
Outputs from BMC Genomics
#1,795
of 11,244 outputs
Outputs of similar age
#37,924
of 206,378 outputs
Outputs of similar age from BMC Genomics
#39
of 186 outputs
Altmetric has tracked 25,371,288 research outputs across all sources so far. Compared to these this one has done well and is in the 81st percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 11,244 research outputs from this source. They receive a mean Attention Score of 4.8. This one has done well, scoring higher than 83% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 206,378 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 81% of its contemporaries.
We're also able to compare this research output to 186 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 79% of its contemporaries.