↓ Skip to main content

Assessing De Novo transcriptome assembly metrics for consistency and utility

Overview of attention for article published in BMC Genomics, July 2013
Altmetric Badge

About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (90th percentile)
  • High Attention Score compared to outputs of the same age and source (90th percentile)

Mentioned by

twitter
24 X users
wikipedia
5 Wikipedia pages

Citations

dimensions_citation
105 Dimensions

Readers on

mendeley
303 Mendeley
citeulike
2 CiteULike
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Title
Assessing De Novo transcriptome assembly metrics for consistency and utility
Published in
BMC Genomics, July 2013
DOI 10.1186/1471-2164-14-465
Pubmed ID
Authors

Shawn T O’Neil, Scott J Emrich

Abstract

Transcriptome sequencing and assembly represent a great resource for the study of non-model species, and many metrics have been used to evaluate and compare these assemblies. Unfortunately, it is still unclear which of these metrics accurately reflect assembly quality.

X Demographics

X Demographics

The data shown below were collected from the profiles of 24 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 303 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 6 2%
United States 6 2%
Spain 3 <1%
United Kingdom 3 <1%
Australia 2 <1%
Sweden 2 <1%
Brazil 2 <1%
Austria 1 <1%
Netherlands 1 <1%
Other 10 3%
Unknown 267 88%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 83 27%
Researcher 63 21%
Student > Master 41 14%
Student > Bachelor 28 9%
Other 16 5%
Other 48 16%
Unknown 24 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 182 60%
Biochemistry, Genetics and Molecular Biology 56 18%
Computer Science 12 4%
Environmental Science 4 1%
Neuroscience 4 1%
Other 12 4%
Unknown 33 11%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 16. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 04 May 2023.
All research outputs
#2,339,500
of 26,017,215 outputs
Outputs from BMC Genomics
#605
of 11,367 outputs
Outputs of similar age
#19,286
of 210,608 outputs
Outputs of similar age from BMC Genomics
#18
of 189 outputs
Altmetric has tracked 26,017,215 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 90th percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 11,367 research outputs from this source. They receive a mean Attention Score of 4.9. This one has done particularly well, scoring higher than 94% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 210,608 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 189 others from the same source and published within six weeks on either side of this one. This one has done particularly well, scoring higher than 90% of its contemporaries.