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MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

Overview of attention for article published in BMC Bioinformatics, September 2013
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Title
MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
Published in
BMC Bioinformatics, September 2013
DOI 10.1186/1471-2105-14-271
Pubmed ID
Authors

Caroline Bérard, Michael Seifert, Tristan Mary-Huard, Marie-Laure Martin-Magniette

Abstract

Chromatin immunoprecipitation coupled with hybridization to a tiling array (ChIP-chip) is a cost-effective and routinely used method to identify protein-DNA interactions or chromatin/histone modifications. The robust identification of ChIP-enriched regions is frequently complicated by noisy measurements. This identification can be improved by accounting for dependencies between adjacent probes on chromosomes and by modeling of biological replicates.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 14 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Netherlands 1 7%
Unknown 13 93%

Demographic breakdown

Readers by professional status Count As %
Researcher 7 50%
Student > Ph. D. Student 4 29%
Professor 1 7%
Student > Master 1 7%
Unknown 1 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 57%
Mathematics 2 14%
Biochemistry, Genetics and Molecular Biology 2 14%
Computer Science 1 7%
Unknown 1 7%