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Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

Overview of attention for article published in BMC Genomics, September 2013
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  • Above-average Attention Score compared to outputs of the same age and source (62nd percentile)

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Title
Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing
Published in
BMC Genomics, September 2013
DOI 10.1186/1471-2164-14-614
Pubmed ID
Authors

Arianne Tremblay, Parsa Hosseini, Shuxian Li, Nadim W Alkharouf, Benjamin F Matthews

Abstract

Phakopsora pachyrhizi, the causal agent responsible for soybean rust, is among the top hundred most virulent plant pathogens and can cause soybean yield losses of up to 80% when appropriate conditions are met. We used mRNA-Seq by Illumina to analyze pathogen transcript abundance at 15 seconds (s), 7 hours (h), 48 h, and 10 days (d) after inoculation (ai) of susceptible soybean leaves with P. pachyrhizi to gain new insights into transcript abundance in soybean and the pathogen at specific time-points during the infection including the uredinial stage.

X Demographics

X Demographics

The data shown below were collected from the profiles of 4 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 54 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 54 100%

Demographic breakdown

Readers by professional status Count As %
Student > Master 11 20%
Researcher 11 20%
Student > Doctoral Student 9 17%
Student > Ph. D. Student 9 17%
Student > Bachelor 4 7%
Other 6 11%
Unknown 4 7%
Readers by discipline Count As %
Agricultural and Biological Sciences 37 69%
Biochemistry, Genetics and Molecular Biology 8 15%
Environmental Science 2 4%
Computer Science 1 2%
Engineering 1 2%
Other 0 0%
Unknown 5 9%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 3. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 22 June 2014.
All research outputs
#14,388,554
of 25,374,647 outputs
Outputs from BMC Genomics
#4,750
of 11,244 outputs
Outputs of similar age
#107,955
of 210,822 outputs
Outputs of similar age from BMC Genomics
#77
of 208 outputs
Altmetric has tracked 25,374,647 research outputs across all sources so far. This one is in the 42nd percentile – i.e., 42% of other outputs scored the same or lower than it.
So far Altmetric has tracked 11,244 research outputs from this source. They receive a mean Attention Score of 4.8. This one has gotten more attention than average, scoring higher than 56% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 210,822 tracked outputs that were published within six weeks on either side of this one in any source. This one is in the 48th percentile – i.e., 48% of its contemporaries scored the same or lower than it.
We're also able to compare this research output to 208 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 62% of its contemporaries.