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A SNP profiling panel for sample tracking in whole-exome sequencing studies

Overview of attention for article published in Genome Medicine, September 2013
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (90th percentile)
  • Good Attention Score compared to outputs of the same age and source (72nd percentile)

Mentioned by

twitter
14 X users
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1 patent
wikipedia
1 Wikipedia page

Citations

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59 Dimensions

Readers on

mendeley
124 Mendeley
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2 CiteULike
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Title
A SNP profiling panel for sample tracking in whole-exome sequencing studies
Published in
Genome Medicine, September 2013
DOI 10.1186/gm492
Pubmed ID
Authors

Reuben J Pengelly, Jane Gibson, Gaia Andreoletti, Andrew Collins, Christopher J Mattocks, Sarah Ennis

Abstract

Whole-exome sequencing provides a cost-effective means to sequence protein coding regions within the genome, which are significantly enriched for etiological variants. We describe a panel of single nucleotide polymorphisms (SNPs) to facilitate the validation of data provenance in whole-exome sequencing studies. This is particularly significant where multiple processing steps necessitate transfer of sample custody between clinical, laboratory and bioinformatics facilities. SNPs captured by all commonly used exome enrichment kits were identified, and filtered for possible confounding properties. The optimised panel provides a simple, yet powerful, method for the assignment of intrinsic, highly discriminatory identifiers to genetic samples.

X Demographics

X Demographics

The data shown below were collected from the profiles of 14 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 124 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 4 3%
United Kingdom 2 2%
Italy 1 <1%
Germany 1 <1%
France 1 <1%
Luxembourg 1 <1%
Unknown 114 92%

Demographic breakdown

Readers by professional status Count As %
Researcher 41 33%
Student > Ph. D. Student 16 13%
Other 13 10%
Student > Master 11 9%
Student > Bachelor 8 6%
Other 17 14%
Unknown 18 15%
Readers by discipline Count As %
Agricultural and Biological Sciences 46 37%
Biochemistry, Genetics and Molecular Biology 28 23%
Medicine and Dentistry 17 14%
Computer Science 3 2%
Engineering 3 2%
Other 6 5%
Unknown 21 17%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 15. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 07 November 2019.
All research outputs
#2,428,748
of 25,374,917 outputs
Outputs from Genome Medicine
#543
of 1,585 outputs
Outputs of similar age
#21,333
of 216,594 outputs
Outputs of similar age from Genome Medicine
#6
of 22 outputs
Altmetric has tracked 25,374,917 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 90th percentile: it's in the top 10% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 1,585 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 26.8. This one has gotten more attention than average, scoring higher than 65% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 216,594 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 90% of its contemporaries.
We're also able to compare this research output to 22 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 72% of its contemporaries.