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Towards the integration, annotation and association of historical microarray experiments with RNA-seq

Overview of attention for article published in BMC Bioinformatics, October 2013
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (87th percentile)
  • High Attention Score compared to outputs of the same age and source (86th percentile)

Mentioned by

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12 X users
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1 patent
googleplus
1 Google+ user

Citations

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15 Dimensions

Readers on

mendeley
69 Mendeley
citeulike
3 CiteULike
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Title
Towards the integration, annotation and association of historical microarray experiments with RNA-seq
Published in
BMC Bioinformatics, October 2013
DOI 10.1186/1471-2105-14-s14-s4
Pubmed ID
Authors

Shweta S Chavan, Michael A Bauer, Erich A Peterson, Christoph J Heuck, Donald J Johann

Abstract

Transcriptome analysis by microarrays has produced important advances in biomedicine. For instance in multiple myeloma (MM), microarray approaches led to the development of an effective disease subtyping via cluster assignment, and a 70 gene risk score. Both enabled an improved molecular understanding of MM, and have provided prognostic information for the purposes of clinical management. Many researchers are now transitioning to Next Generation Sequencing (NGS) approaches and RNA-seq in particular, due to its discovery-based nature, improved sensitivity, and dynamic range. Additionally, RNA-seq allows for the analysis of gene isoforms, splice variants, and novel gene fusions. Given the voluminous amounts of historical microarray data, there is now a need to associate and integrate microarray and RNA-seq data via advanced bioinformatic approaches.

X Demographics

X Demographics

The data shown below were collected from the profiles of 12 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 69 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 1 1%
Unknown 68 99%

Demographic breakdown

Readers by professional status Count As %
Researcher 16 23%
Student > Master 14 20%
Student > Ph. D. Student 12 17%
Student > Bachelor 4 6%
Student > Doctoral Student 3 4%
Other 12 17%
Unknown 8 12%
Readers by discipline Count As %
Agricultural and Biological Sciences 27 39%
Biochemistry, Genetics and Molecular Biology 12 17%
Computer Science 7 10%
Medicine and Dentistry 7 10%
Mathematics 1 1%
Other 5 7%
Unknown 10 14%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 11. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 21 April 2016.
All research outputs
#2,776,768
of 22,725,280 outputs
Outputs from BMC Bioinformatics
#934
of 7,262 outputs
Outputs of similar age
#26,706
of 209,651 outputs
Outputs of similar age from BMC Bioinformatics
#14
of 107 outputs
Altmetric has tracked 22,725,280 research outputs across all sources so far. Compared to these this one has done well and is in the 87th percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 7,262 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has done well, scoring higher than 87% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 209,651 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 87% of its contemporaries.
We're also able to compare this research output to 107 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 86% of its contemporaries.