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Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome

Overview of attention for article published in Biology Direct, April 2010
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Title
Genome-wide analysis of transposable elements and tandem repeats in the compact placozoan genome
Published in
Biology Direct, April 2010
DOI 10.1186/1745-6150-5-18
Pubmed ID
Authors

Shi Wang, Lingling Zhang, Eli Meyer, Zhenmin Bao

Abstract

The placozoan Trichoplax adhaerens has a compact genome with many primitive eumetazoan characteristics. In order to gain a better understanding of its genome architecture, we conducted a detailed analysis of repeat content in this genome. The transposable element (TE) content is lower than that of other metazoans, and the few TEs present in the genome appear to be inactive. A new phylogenetic clade of the gypsy-like LTR retrotransposons was identified, which includes the majority of gypsy-like elements in Trichoplax. A particular microsatellite motif (ACAGT) exhibits unexpectedly high abundance, and also has strong association with its nearby genes.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 38 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 3 8%
Norway 1 3%
Brazil 1 3%
Canada 1 3%
Argentina 1 3%
Unknown 31 82%

Demographic breakdown

Readers by professional status Count As %
Researcher 12 32%
Student > Ph. D. Student 11 29%
Student > Master 6 16%
Student > Doctoral Student 2 5%
Professor > Associate Professor 2 5%
Other 3 8%
Unknown 2 5%
Readers by discipline Count As %
Agricultural and Biological Sciences 27 71%
Biochemistry, Genetics and Molecular Biology 3 8%
Computer Science 1 3%
Immunology and Microbiology 1 3%
Physics and Astronomy 1 3%
Other 2 5%
Unknown 3 8%