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Identification of pathogen genomic variants through an integrated pipeline

Overview of attention for article published in BMC Bioinformatics, March 2014
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About this Attention Score

  • In the top 25% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (81st percentile)
  • Good Attention Score compared to outputs of the same age and source (77th percentile)

Mentioned by

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12 X users
googleplus
1 Google+ user

Citations

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48 Dimensions

Readers on

mendeley
87 Mendeley
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2 CiteULike
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Title
Identification of pathogen genomic variants through an integrated pipeline
Published in
BMC Bioinformatics, March 2014
DOI 10.1186/1471-2105-15-63
Pubmed ID
Authors

Micah J Manary, Suriya S Singhakul, Erika L Flannery, Selina ER Bopp, Victoria C Corey, Andrew Taylor Bright, Case W McNamara, John R Walker, Elizabeth A Winzeler

Abstract

Whole-genome sequencing represents a powerful experimental tool for pathogen research. We present methods for the analysis of small eukaryotic genomes, including a streamlined system (called Platypus) for finding single nucleotide and copy number variants as well as recombination events.

X Demographics

X Demographics

The data shown below were collected from the profiles of 12 X users who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 87 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 3 3%
United Kingdom 3 3%
Australia 2 2%
Kenya 1 1%
Cuba 1 1%
Netherlands 1 1%
France 1 1%
Sweden 1 1%
Japan 1 1%
Other 1 1%
Unknown 72 83%

Demographic breakdown

Readers by professional status Count As %
Researcher 29 33%
Student > Ph. D. Student 22 25%
Student > Bachelor 9 10%
Student > Master 7 8%
Professor > Associate Professor 5 6%
Other 8 9%
Unknown 7 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 45 52%
Biochemistry, Genetics and Molecular Biology 13 15%
Computer Science 11 13%
Medicine and Dentistry 5 6%
Engineering 3 3%
Other 3 3%
Unknown 7 8%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 8. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 18 March 2014.
All research outputs
#4,214,594
of 23,864,690 outputs
Outputs from BMC Bioinformatics
#1,558
of 7,454 outputs
Outputs of similar age
#40,673
of 224,253 outputs
Outputs of similar age from BMC Bioinformatics
#24
of 101 outputs
Altmetric has tracked 23,864,690 research outputs across all sources so far. Compared to these this one has done well and is in the 82nd percentile: it's in the top 25% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 7,454 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.5. This one has done well, scoring higher than 79% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 224,253 tracked outputs that were published within six weeks on either side of this one in any source. This one has done well, scoring higher than 81% of its contemporaries.
We're also able to compare this research output to 101 others from the same source and published within six weeks on either side of this one. This one has done well, scoring higher than 77% of its contemporaries.