↓ Skip to main content

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology

Overview of attention for article published in BMC Genomics, November 2007
Altmetric Badge

Citations

dimensions_citation
219 Dimensions

Readers on

mendeley
265 Mendeley
citeulike
4 CiteULike
You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more.
Title
High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology
Published in
BMC Genomics, November 2007
DOI 10.1186/1471-2164-8-424
Pubmed ID
Authors

Diego Lijavetzky, José Antonio Cabezas, Ana Ibáñez, Virginia Rodríguez, José M Martínez-Zapater

Abstract

Single-nucleotide polymorphisms (SNPs) are the most abundant type of DNA sequence polymorphisms. Their higher availability and stability when compared to simple sequence repeats (SSRs) provide enhanced possibilities for genetic and breeding applications such as cultivar identification, construction of genetic maps, the assessment of genetic diversity, the detection of genotype/phenotype associations, or marker-assisted breeding. In addition, the efficiency of these activities can be improved thanks to the ease with which SNP genotyping can be automated. Expressed sequence tags (EST) sequencing projects in grapevine are allowing for the in silico detection of multiple putative sequence polymorphisms within and among a reduced number of cultivars. In parallel, the sequence of the grapevine cultivar Pinot Noir is also providing thousands of polymorphisms present in this highly heterozygous genome. Still the general application of those SNPs requires further validation since their use could be restricted to those specific genotypes.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 265 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Brazil 5 2%
United States 4 2%
Spain 3 1%
Canada 2 <1%
Sweden 2 <1%
Italy 2 <1%
United Kingdom 2 <1%
Chile 1 <1%
Norway 1 <1%
Other 10 4%
Unknown 233 88%

Demographic breakdown

Readers by professional status Count As %
Researcher 92 35%
Student > Ph. D. Student 54 20%
Student > Master 26 10%
Student > Doctoral Student 16 6%
Student > Postgraduate 15 6%
Other 40 15%
Unknown 22 8%
Readers by discipline Count As %
Agricultural and Biological Sciences 199 75%
Biochemistry, Genetics and Molecular Biology 27 10%
Environmental Science 6 2%
Computer Science 2 <1%
Chemical Engineering 1 <1%
Other 4 2%
Unknown 26 10%