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transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences

Overview of attention for article published in BMC Bioinformatics, June 2005
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About this Attention Score

  • Good Attention Score compared to outputs of the same age (69th percentile)
  • Above-average Attention Score compared to outputs of the same age and source (58th percentile)

Mentioned by

q&a
2 Q&A threads

Citations

dimensions_citation
188 Dimensions

Readers on

mendeley
159 Mendeley
citeulike
1 CiteULike
connotea
2 Connotea
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Title
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Published in
BMC Bioinformatics, June 2005
DOI 10.1186/1471-2105-6-156
Pubmed ID
Authors

Olaf RP Bininda-Emonds

Abstract

Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficult problem. For protein-coding DNA sequences, it is more advantageous in terms of both speed and accuracy to align the amino-acid sequences specified by the DNA sequences rather than the DNA sequences themselves. Many implementations making use of this concept of "translated alignments" are incomplete in the sense that they require the user to manually translate the DNA sequences and to perform the amino-acid alignment. As such, they are not well suited to large-scale automated alignments of large and/or numerous DNA data sets.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 159 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United States 5 3%
Germany 2 1%
United Kingdom 2 1%
Chile 1 <1%
France 1 <1%
Japan 1 <1%
Canada 1 <1%
Unknown 146 92%

Demographic breakdown

Readers by professional status Count As %
Researcher 41 26%
Student > Ph. D. Student 28 18%
Student > Master 19 12%
Professor > Associate Professor 11 7%
Student > Doctoral Student 10 6%
Other 30 19%
Unknown 20 13%
Readers by discipline Count As %
Agricultural and Biological Sciences 90 57%
Biochemistry, Genetics and Molecular Biology 24 15%
Computer Science 5 3%
Earth and Planetary Sciences 3 2%
Immunology and Microbiology 2 1%
Other 10 6%
Unknown 25 16%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 5. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 July 2017.
All research outputs
#5,842,899
of 22,649,029 outputs
Outputs from BMC Bioinformatics
#2,168
of 7,234 outputs
Outputs of similar age
#17,184
of 56,646 outputs
Outputs of similar age from BMC Bioinformatics
#12
of 29 outputs
Altmetric has tracked 22,649,029 research outputs across all sources so far. This one has received more attention than most of these and is in the 73rd percentile.
So far Altmetric has tracked 7,234 research outputs from this source. They typically receive a little more attention than average, with a mean Attention Score of 5.4. This one has gotten more attention than average, scoring higher than 69% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 56,646 tracked outputs that were published within six weeks on either side of this one in any source. This one has gotten more attention than average, scoring higher than 69% of its contemporaries.
We're also able to compare this research output to 29 others from the same source and published within six weeks on either side of this one. This one has gotten more attention than average, scoring higher than 58% of its contemporaries.