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Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium

Overview of attention for article published in Environmental Microbiome, June 2014
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Title
Genome analysis of Desulfotomaculum gibsoniae strain GrollT a highly versatile Gram-positive sulfate-reducing bacterium
Published in
Environmental Microbiome, June 2014
DOI 10.4056/sigs.5209235
Pubmed ID
Authors

Jan Kuever, Michael Visser, Claudia Loeffler, Matthias Boll, Petra Worm, Diana Z. Sousa, Caroline M. Plugge, Peter J. Schaap, Gerard Muyzer, Ines A. C. Pereira, Sofiya N. Parshina, Lynne A. Goodwin, Nikos C. Kyrpides, Janine Detter, Tanja Woyke, Patrick Chain, Karen W. Davenport, Manfred Rohde, Stefan Spring, Hans-Peter Klenk, Alfons J. M. Stams

Abstract

Desulfotomaculum gibsoniae is a mesophilic member of the polyphyletic spore-forming genus Desulfotomaculum within the family Peptococcaceae. This bacterium was isolated from a freshwater ditch and is of interest because it can grow with a large variety of organic substrates, in particular several aromatic compounds, short-chain and medium-chain fatty acids, which are degraded completely to carbon dioxide coupled to the reduction of sulfate. It can grow autotrophically with H2 + CO2 and sulfate and slowly acetogenically with H2 + CO2, formate or methoxylated aromatic compounds in the absence of sulfate. It does not require any vitamins for growth. Here, we describe the features of D. gibsoniae strain Groll(T) together with the genome sequence and annotation. The chromosome has 4,855,529 bp organized in one circular contig and is the largest genome of all sequenced Desulfotomaculum spp. to date. A total of 4,666 candidate protein-encoding genes and 96 RNA genes were identified. Genes of the acetyl-CoA pathway, possibly involved in heterotrophic growth and in CO2 fixation during autotrophic growth, are present. The genome contains a large set of genes for the anaerobic transformation and degradation of aromatic compounds, which are lacking in the other sequenced Desulfotomaculum genomes.

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The data shown below were compiled from readership statistics for 45 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Germany 1 2%
Unknown 44 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 10 22%
Researcher 9 20%
Student > Doctoral Student 3 7%
Professor > Associate Professor 3 7%
Student > Bachelor 2 4%
Other 6 13%
Unknown 12 27%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 12 27%
Agricultural and Biological Sciences 9 20%
Environmental Science 4 9%
Immunology and Microbiology 3 7%
Chemical Engineering 1 2%
Other 1 2%
Unknown 15 33%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 09 April 2014.
All research outputs
#20,655,488
of 25,371,288 outputs
Outputs from Environmental Microbiome
#579
of 786 outputs
Outputs of similar age
#177,909
of 242,885 outputs
Outputs of similar age from Environmental Microbiome
#34
of 49 outputs
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