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Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice

Overview of attention for article published in BMC Genomic Data, April 2014
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Title
Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice
Published in
BMC Genomic Data, April 2014
DOI 10.1186/1471-2156-15-50
Pubmed ID
Authors

Eiji Yamamoto, Hiroyoshi Iwata, Takanari Tanabata, Ritsuko Mizobuchi, Jun-ichi Yonemaru, Toshio Yamamoto, Masahiro Yano

Abstract

In genetic analysis of agronomic traits, quantitative trait loci (QTLs) that control the same phenotype are often closely linked. Furthermore, many QTLs are localized in specific genomic regions (QTL clusters) that include naturally occurring allelic variations in different genes. Therefore, linkage among QTLs may complicate the detection of each individual QTL. This problem can be resolved by using populations that include many potential recombination sites. Recently, multi-parent populations have been developed and used for QTL analysis. However, their efficiency for detection of linked QTLs has not received attention. By using information on rice, we simulated the construction of a multi-parent population followed by cycles of recurrent crossing and inbreeding, and we investigated the resulting genome structure and its usefulness for detecting linked QTLs as a function of the number of cycles of recurrent crossing.

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X Demographics

The data shown below were collected from the profile of 1 X user who shared this research output. Click here to find out more about how the information was compiled.
Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 37 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Indonesia 1 3%
Netherlands 1 3%
Unknown 35 95%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 10 27%
Researcher 9 24%
Professor > Associate Professor 4 11%
Student > Master 4 11%
Student > Doctoral Student 2 5%
Other 3 8%
Unknown 5 14%
Readers by discipline Count As %
Agricultural and Biological Sciences 26 70%
Computer Science 2 5%
Nursing and Health Professions 1 3%
Social Sciences 1 3%
Unknown 7 19%
Attention Score in Context

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 27 April 2014.
All research outputs
#20,656,161
of 25,374,647 outputs
Outputs from BMC Genomic Data
#861
of 1,204 outputs
Outputs of similar age
#177,390
of 241,070 outputs
Outputs of similar age from BMC Genomic Data
#13
of 22 outputs
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