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Direct observation of genomic heterogeneity through local haplotyping analysis

Overview of attention for article published in BMC Genomics, June 2014
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Title
Direct observation of genomic heterogeneity through local haplotyping analysis
Published in
BMC Genomics, June 2014
DOI 10.1186/1471-2164-15-418
Pubmed ID
Authors

Kamalakar Gulukota, Donald L Helseth Jr, Janardan D Khandekar

Abstract

It has been an abiding belief among geneticists that multicellular organisms' genomes can be analyzed under the assumption that a single individual has a uniform genome in all its cells. Despite some evidence to the contrary, this belief has been used as an axiomatic assumption in most genome analysis software packages. In this paper we present observations in human whole genome data, human whole exome data and in mouse whole genome data to challenge this assumption. We show that heterogeneity is in fact ubiquitous and readily observable in ordinary Next Generation Sequencing (NGS) data.

Mendeley readers

Mendeley readers

The data shown below were compiled from readership statistics for 18 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Australia 2 11%
United States 2 11%
Mexico 1 6%
Unknown 13 72%

Demographic breakdown

Readers by professional status Count As %
Researcher 5 28%
Student > Ph. D. Student 3 17%
Other 2 11%
Professor > Associate Professor 2 11%
Student > Master 2 11%
Other 1 6%
Unknown 3 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 8 44%
Computer Science 2 11%
Medicine and Dentistry 2 11%
Biochemistry, Genetics and Molecular Biology 1 6%
Pharmacology, Toxicology and Pharmaceutical Science 1 6%
Other 1 6%
Unknown 3 17%