Title |
The American cranberry: first insights into the whole genome of a species adapted to bog habitat
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Published in |
BMC Plant Biology, June 2014
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DOI | 10.1186/1471-2229-14-165 |
Pubmed ID | |
Authors |
James Polashock, Ehud Zelzion, Diego Fajardo, Juan Zalapa, Laura Georgi, Debashish Bhattacharya, Nicholi Vorsa |
Abstract |
The American cranberry (Vaccinium macrocarpon Ait.) is one of only three widely-cultivated fruit crops native to North America- the other two are blueberry (Vaccinium spp.) and native grape (Vitis spp.). In terms of taxonomy, cranberries are in the core Ericales, an order for which genome sequence data are currently lacking. In addition, cranberries produce a host of important polyphenolic secondary compounds, some of which are beneficial to human health. Whereas next-generation sequencing technology is allowing the advancement of whole-genome sequencing, one major obstacle to the successful assembly from short-read sequence data of complex diploid (and higher ploidy) organisms is heterozygosity. Cranberry has the advantage of being diploid (2n = 2x = 24) and self-fertile. To minimize the issue of heterozygosity, we sequenced the genome of a fifth-generation inbred genotype (F >= 0.97) derived from five generations of selfing originating from the cultivar Ben Lear. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 9 | 28% |
United Kingdom | 3 | 9% |
France | 2 | 6% |
Canada | 2 | 6% |
India | 1 | 3% |
Australia | 1 | 3% |
Unknown | 14 | 44% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 20 | 63% |
Scientists | 11 | 34% |
Practitioners (doctors, other healthcare professionals) | 1 | 3% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Portugal | 1 | <1% |
Netherlands | 1 | <1% |
Uruguay | 1 | <1% |
Brazil | 1 | <1% |
United Kingdom | 1 | <1% |
Canada | 1 | <1% |
Russia | 1 | <1% |
Japan | 1 | <1% |
Unknown | 102 | 93% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 23 | 21% |
Researcher | 22 | 20% |
Student > Master | 11 | 10% |
Student > Bachelor | 8 | 7% |
Student > Doctoral Student | 7 | 6% |
Other | 15 | 14% |
Unknown | 24 | 22% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 58 | 53% |
Biochemistry, Genetics and Molecular Biology | 13 | 12% |
Engineering | 2 | 2% |
Environmental Science | 1 | <1% |
Mathematics | 1 | <1% |
Other | 6 | 5% |
Unknown | 29 | 26% |