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A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri

Overview of attention for article published in BMC Genomics, September 2017
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Title
A miRNA catalogue and ncRNA annotation of the short-living fish Nothobranchius furzeri
Published in
BMC Genomics, September 2017
DOI 10.1186/s12864-017-3951-8
Pubmed ID
28874118
Authors

Mario Baumgart, Emanuel Barth, Aurora Savino, Marco Groth, Philipp Koch, Andreas Petzold, Ivan Arisi, Matthias Platzer, Manja Marz, Alessandro Cellerino

Abstract

The short-lived fish Nothobranchius furzeri is the shortest-lived vertebrate that can be cultured in captivity and was recently established as a model organism for aging research. Small non-coding RNAs, especially miRNAs, are implicated in age dependent control of gene expression. Here, we present a comprehensive catalogue of miRNAs and several other non-coding RNA classes (ncRNAs) for Nothobranchius furzeri. Analyzing multiple small RNA-Seq libraries, we show most of these identified miRNAs are expressed in at least one of seven Nothobranchius species. Additionally, duplication and clustering of N. furzeri miRNAs was analyzed and compared to the four fish species Danio rerio, Oryzias latipes, Gasterosteus aculeatus and Takifugu rubripes. A peculiar characteristic of N. furzeri, as compared to other teleosts, was a duplication of the miR-29 cluster. The completeness of the catalogue we provide is comparable to that of the zebrafish. This catalogue represents a basis to investigate the role of miRNAs in aging and development in this species.

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Twitter Demographics

The data shown below were collected from the profile of 1 tweeter who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 53 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
Unknown 53 100%

Demographic breakdown

Readers by professional status Count As %
Researcher 11 21%
Student > Master 8 15%
Student > Bachelor 7 13%
Student > Ph. D. Student 6 11%
Student > Doctoral Student 3 6%
Other 8 15%
Unknown 10 19%
Readers by discipline Count As %
Biochemistry, Genetics and Molecular Biology 16 30%
Agricultural and Biological Sciences 16 30%
Neuroscience 4 8%
Environmental Science 2 4%
Immunology and Microbiology 1 2%
Other 1 2%
Unknown 13 25%

Attention Score in Context

This research output has an Altmetric Attention Score of 1. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 01 November 2017.
All research outputs
#10,715,666
of 12,083,996 outputs
Outputs from BMC Genomics
#6,245
of 7,118 outputs
Outputs of similar age
#238,683
of 284,714 outputs
Outputs of similar age from BMC Genomics
#428
of 531 outputs
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So far Altmetric has tracked 7,118 research outputs from this source. They receive a mean Attention Score of 4.3. This one is in the 1st percentile – i.e., 1% of its peers scored the same or lower than it.
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