@BioMickWatson Maybe using Mummer and then parsing the number of blocks in the coords output as a measure of syntenic similarity. Seems like from this paper assembly quality should also be factored in: https://t.co/KZdCErgEsc
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RT @andreaswallberg: Help Genomics people! If two species differ in a genomic region by an inversion that has flipped the order of genes be…
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Help Genomics people! If two species differ in a genomic region by an inversion that has flipped the order of genes between the genomes but otherwise maintained the order of genes within the structure, are these genes syntenic? See block a vs b here: https
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RT @rlebron_bioinfo: Inferring synteny between genome assemblies: a systematic evaluation https://t.co/QRAoWhTFAL