3,169 followers
5,179 followers
@daniel_c0deb0t @pierre_marijon Read the bwa source code. So many nice bit twiddling tricks there. And see all the vectorized smith watermark tricks in minimap2 and other long read aligner. So much fun stuff. https://t.co/z0g9etMtfR
8,352 followers
@daniel_c0deb0t @lh3lh3 @ocxtal @BenLangmead Yes, Ben's implementation is awesome! The cool thing about @ocxtal's implementation is the way it rearranges the recurrence to maximize the potential for vectorization : see e.g. https://t.co/kWqsAEzFjb
56 followers
RT @lh3lh3: The Suzuki-Kasahara base-level alignment algorithm (by @ocxtal and @mkasahara; used in minialign and minimap2) is published: ht…