Title |
Genome Annotation Transfer Utility (GATU): rapid annotation of viral genomes using a closely related reference genome
|
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Published in |
BMC Genomics, June 2006
|
DOI | 10.1186/1471-2164-7-150 |
Pubmed ID | |
Authors |
Vasily Tcherepanov, Angelika Ehlers, Chris Upton |
Abstract |
Since DNA sequencing has become easier and cheaper, an increasing number of closely related viral genomes have been sequenced. However, many of these have been deposited in GenBank without annotations, severely limiting their value to researchers. While maintaining comprehensive genomic databases for a set of virus families at the Viral Bioinformatics Resource Center http://www.biovirus.org and Viral Bioinformatics - Canada http://www.virology.ca, we found that researchers were unnecessarily spending time annotating viral genomes that were close relatives of already annotated viruses. We have therefore designed and implemented a novel tool, Genome Annotation Transfer Utility (GATU), to transfer annotations from a previously annotated reference genome to a new target genome, thereby greatly reducing this laborious task. |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Germany | 1 | <1% |
Turkey | 1 | <1% |
Italy | 1 | <1% |
Brazil | 1 | <1% |
Sweden | 1 | <1% |
United Kingdom | 1 | <1% |
Spain | 1 | <1% |
United States | 1 | <1% |
Unknown | 111 | 93% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 29 | 24% |
Student > Ph. D. Student | 23 | 19% |
Student > Master | 20 | 17% |
Student > Bachelor | 13 | 11% |
Professor > Associate Professor | 4 | 3% |
Other | 13 | 11% |
Unknown | 17 | 14% |
Readers by discipline | Count | As % |
---|---|---|
Agricultural and Biological Sciences | 45 | 38% |
Biochemistry, Genetics and Molecular Biology | 22 | 18% |
Immunology and Microbiology | 10 | 8% |
Veterinary Science and Veterinary Medicine | 7 | 6% |
Medicine and Dentistry | 3 | 3% |
Other | 10 | 8% |
Unknown | 22 | 18% |