Title |
Physical activity, smoking, and genetic predisposition to obesity in people from Pakistan: the PROMIS study
|
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Published in |
BMC Medical Genomics, December 2015
|
DOI | 10.1186/s12881-015-0259-x |
Pubmed ID | |
Authors |
Shafqat Ahmad, Wei Zhao, Frida Renström, Asif Rasheed, Maria Samuel, Mozzam Zaidi, Nabi Shah, Nadeem Hayyat Mallick, Khan Shah Zaman, Mohammad Ishaq, Syed Zahed Rasheed, Fazal-ur-Rheman Memon, Bashir Hanif, Muhammad Shakir Lakhani, Faisal Ahmed, Shahana Urooj Kazmi, Philippe Frossard, Paul W. Franks, Danish Saleheen |
Abstract |
Multiple genetic variants have been reliably associated with obesity-related traits in Europeans, but little is known about their associations and interactions with lifestyle factors in South Asians. In 16,157 Pakistani adults (8232 controls; 7925 diagnosed with myocardial infarction [MI]) enrolled in the PROMIS Study, we tested whether: a) BMI-associated loci, individually or in aggregate (as a genetic risk score - GRS), are associated with BMI; b) physical activity and smoking modify the association of these loci with BMI. Analyses were adjusted for age, age(2), sex, MI (yes/no), and population substructure. Of 95 SNPs studied here, 73 showed directionally consistent effects on BMI as reported in Europeans. Each additional BMI-raising allele of the GRS was associated with 0.04 (SE = 0.01) kg/m(2) higher BMI (P = 4.5 × 10(-14)). We observed nominal evidence of interactions of CLIP1 rs11583200 (P interaction = 0.014), CADM2 rs13078960 (P interaction = 0.037) and GALNT10 rs7715256 (P interaction = 0.048) with physical activity, and PTBP2 rs11165643 (P interaction = 0.045), HIP1 rs1167827 (P interaction = 0.015), C6orf106 rs205262 (P interaction = 0.032) and GRID1 rs7899106 (P interaction = 0.043) with smoking on BMI. Most BMI-associated loci have directionally consistent effects on BMI in Pakistanis and Europeans. There were suggestive interactions of established BMI-related SNPs with smoking or physical activity. |
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Geographical breakdown
Country | Count | As % |
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Unknown | 65 | 100% |
Demographic breakdown
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Student > Master | 13 | 20% |
Student > Ph. D. Student | 10 | 15% |
Student > Bachelor | 10 | 15% |
Researcher | 4 | 6% |
Professor > Associate Professor | 3 | 5% |
Other | 8 | 12% |
Unknown | 17 | 26% |
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Sports and Recreations | 2 | 3% |
Other | 3 | 5% |
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