Title |
Disbiome database: linking the microbiome to disease
|
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Published in |
BMC Microbiology, June 2018
|
DOI | 10.1186/s12866-018-1197-5 |
Pubmed ID | |
Authors |
Yorick Janssens, Joachim Nielandt, Antoon Bronselaer, Nathan Debunne, Frederick Verbeke, Evelien Wynendaele, Filip Van Immerseel, Yves-Paul Vandewynckel, Guy De Tré, Bart De Spiegeleer |
Abstract |
Recent research has provided fascinating indications and evidence that the host health is linked to its microbial inhabitants. Due to the development of high-throughput sequencing technologies, more and more data covering microbial composition changes in different disease types are emerging. However, this information is dispersed over a wide variety of medical and biomedical disciplines. Disbiome is a database which collects and presents published microbiota-disease information in a standardized way. The diseases are classified using the MedDRA classification system and the micro-organisms are linked to their NCBI and SILVA taxonomy. Finally, each study included in the Disbiome database is assessed for its reporting quality using a standardized questionnaire. Disbiome is the first database giving a clear, concise and up-to-date overview of microbial composition differences in diseases, together with the relevant information of the studies published. The strength of this database lies within the combination of the presence of references to other databases, which enables both specific and diverse search strategies within the Disbiome database, and the human annotation which ensures a simple and structured presentation of the available data. |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 16 | 13% |
United Kingdom | 13 | 10% |
Spain | 11 | 9% |
Australia | 5 | 4% |
Italy | 3 | 2% |
India | 3 | 2% |
Canada | 3 | 2% |
Germany | 2 | 2% |
Mexico | 2 | 2% |
Other | 18 | 14% |
Unknown | 50 | 40% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Members of the public | 75 | 60% |
Scientists | 30 | 24% |
Practitioners (doctors, other healthcare professionals) | 19 | 15% |
Science communicators (journalists, bloggers, editors) | 2 | 2% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 265 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Researcher | 48 | 18% |
Student > Ph. D. Student | 35 | 13% |
Student > Master | 30 | 11% |
Student > Bachelor | 22 | 8% |
Student > Doctoral Student | 14 | 5% |
Other | 29 | 11% |
Unknown | 87 | 33% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 46 | 17% |
Agricultural and Biological Sciences | 41 | 15% |
Computer Science | 17 | 6% |
Medicine and Dentistry | 14 | 5% |
Immunology and Microbiology | 14 | 5% |
Other | 40 | 15% |
Unknown | 93 | 35% |