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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

Overview of attention for article published in Genome Biology (Online Edition), August 2015
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About this Attention Score

  • In the top 5% of all research outputs scored by Altmetric
  • High Attention Score compared to outputs of the same age (95th percentile)

Mentioned by

twitter
63 tweeters
patent
1 patent
facebook
1 Facebook page
wikipedia
5 Wikipedia pages

Citations

dimensions_citation
2060 Dimensions

Readers on

mendeley
1441 Mendeley
citeulike
3 CiteULike
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Title
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
Published in
Genome Biology (Online Edition), August 2015
DOI 10.1186/s13059-015-0721-2
Pubmed ID
Authors

David M. Emms, Steven Kelly

Abstract

Identifying homology relationships between sequences is fundamental to biological research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that solves a previously undetected gene length bias in orthogroup inference, resulting in significant improvements in accuracy. Using real benchmark datasets we demonstrate that OrthoFinder is more accurate than other orthogroup inference methods by between 8 % and 33 %. Furthermore, we demonstrate the utility of OrthoFinder by providing a complete classification of transcription factor gene families in plants revealing 6.9 million previously unobserved relationships.

Twitter Demographics

The data shown below were collected from the profiles of 63 tweeters who shared this research output. Click here to find out more about how the information was compiled.

Mendeley readers

The data shown below were compiled from readership statistics for 1,441 Mendeley readers of this research output. Click here to see the associated Mendeley record.

Geographical breakdown

Country Count As %
United Kingdom 6 <1%
United States 5 <1%
Brazil 5 <1%
France 3 <1%
Spain 3 <1%
Canada 2 <1%
Italy 1 <1%
Sweden 1 <1%
Ireland 1 <1%
Other 7 <1%
Unknown 1407 98%

Demographic breakdown

Readers by professional status Count As %
Student > Ph. D. Student 366 25%
Researcher 237 16%
Student > Master 212 15%
Student > Bachelor 161 11%
Student > Doctoral Student 59 4%
Other 157 11%
Unknown 249 17%
Readers by discipline Count As %
Agricultural and Biological Sciences 572 40%
Biochemistry, Genetics and Molecular Biology 398 28%
Computer Science 43 3%
Environmental Science 24 2%
Immunology and Microbiology 22 2%
Other 88 6%
Unknown 294 20%

Attention Score in Context

This research output has an Altmetric Attention Score of 40. This is our high-level measure of the quality and quantity of online attention that it has received. This Attention Score, as well as the ranking and number of research outputs shown below, was calculated when the research output was last mentioned on 05 August 2021.
All research outputs
#806,788
of 21,744,520 outputs
Outputs from Genome Biology (Online Edition)
#664
of 4,003 outputs
Outputs of similar age
#11,208
of 249,757 outputs
Outputs of similar age from Genome Biology (Online Edition)
#1
of 1 outputs
Altmetric has tracked 21,744,520 research outputs across all sources so far. Compared to these this one has done particularly well and is in the 96th percentile: it's in the top 5% of all research outputs ever tracked by Altmetric.
So far Altmetric has tracked 4,003 research outputs from this source. They typically receive a lot more attention than average, with a mean Attention Score of 27.7. This one has done well, scoring higher than 83% of its peers.
Older research outputs will score higher simply because they've had more time to accumulate mentions. To account for age we can compare this Altmetric Attention Score to the 249,757 tracked outputs that were published within six weeks on either side of this one in any source. This one has done particularly well, scoring higher than 95% of its contemporaries.
We're also able to compare this research output to 1 others from the same source and published within six weeks on either side of this one. This one has scored higher than all of them