Title |
GIVE: portable genome browsers for personal websites
|
---|---|
Published in |
Genome Biology, July 2018
|
DOI | 10.1186/s13059-018-1465-6 |
Pubmed ID | |
Authors |
Xiaoyi Cao, Zhangming Yan, Qiuyang Wu, Alvin Zheng, Sheng Zhong |
Abstract |
Growing popularity and diversity of genomic data demand portable and versatile genome browsers. Here, we present an open source programming library called GIVE that facilitates the creation of personalized genome browsers without requiring a system administrator. By inserting HTML tags, one can add to a personal webpage interactive visualization of multiple types of genomics data, including genome annotation, "linear" quantitative data, and genome interaction data. GIVE includes a graphical interface called HUG (HTML Universal Generator) that automatically generates HTML code for displaying user chosen data, which can be copy-pasted into user's personal website or saved and shared with collaborators. GIVE is available at: https://www.givengine.org/ . |
X Demographics
Geographical breakdown
Country | Count | As % |
---|---|---|
United States | 9 | 18% |
United Kingdom | 5 | 10% |
France | 3 | 6% |
India | 2 | 4% |
Netherlands | 2 | 4% |
Germany | 1 | 2% |
Armenia | 1 | 2% |
Spain | 1 | 2% |
Mexico | 1 | 2% |
Other | 6 | 12% |
Unknown | 19 | 38% |
Demographic breakdown
Type | Count | As % |
---|---|---|
Scientists | 28 | 56% |
Members of the public | 18 | 36% |
Practitioners (doctors, other healthcare professionals) | 3 | 6% |
Science communicators (journalists, bloggers, editors) | 1 | 2% |
Mendeley readers
Geographical breakdown
Country | Count | As % |
---|---|---|
Unknown | 68 | 100% |
Demographic breakdown
Readers by professional status | Count | As % |
---|---|---|
Student > Ph. D. Student | 14 | 21% |
Researcher | 13 | 19% |
Student > Master | 8 | 12% |
Other | 5 | 7% |
Professor | 5 | 7% |
Other | 7 | 10% |
Unknown | 16 | 24% |
Readers by discipline | Count | As % |
---|---|---|
Biochemistry, Genetics and Molecular Biology | 24 | 35% |
Agricultural and Biological Sciences | 18 | 26% |
Computer Science | 4 | 6% |
Environmental Science | 1 | 1% |
Unspecified | 1 | 1% |
Other | 2 | 3% |
Unknown | 18 | 26% |